q-bio.MN · 2026-09-10 · No. 111

Molecular Networks, 2026-09-10.

1 new papers in q-bio.MN. Titles, authors, abstracts. Links to arXiv. Want this in your inbox every morning? Subscribe →

01 — The papers

1 entries
  1. 01

    Are You Learning Biological Signal or Shortcuts? Auditing and Mitigating Bias in Protein-Protein Interaction Datasets

    Judith Bernett, Anton Spannagl, Joel Ås, Markus List, David B. Blumenthal

    q-bio.MN · cs.LG

    Protein-protein interaction (PPI) databases do not faithfully reflect biological realities. Instead, they are influenced by study and technical biases that distort certain protein and interaction attributes. Machine learning models can exploit these as learning shortcuts if the negative dataset is not constructed with care. So far, the shortcuts introduced during PPI dataset construction have only been examined in isolation. Here, we...

    arxiv.org/abs/2609.10193 · PDF

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